Package: clockSim
Title: Streamlined Simulation of Circadian Gene Networks
Version: 0.1.2
Authors@R: 
    person("Ye", "Yuan", , "yeyu@umich.edu", 
    role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0001-9641-9102"))
Description: A user-friendly workflow for simulating circadian clock
        gene networks. Despite decades of advances in modeling
        circadian clock dynamics, the lack of accessible tools for
        reproducible simulation workflows hinders the integration of
        computational modeling with experimental studies. 'clockSim'
        addresses this gap by providing models and helper functions
        with step-by-step vignettes. This package opens up system-level
        exploration of the circadian clock to wet-lab experimentalists,
        and future development will include additional clock
        architectures and other gene circuit models. Currently
        implemented models are based on Leloup and Goldbeter (1998)
        <doi:10.1177/074873098128999934>.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: R (>= 4.1.0)
Imports: bench, dde, dplyr, ggplot2, lomb, matrixStats, odin, rlang,
        tidyr
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
URL: https://github.com/yeyuan98/clockSim
BugReports: https://github.com/yeyuan98/clockSim/issues
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
Repository: https://yeyuan98.r-universe.dev
Date/Publication: 2025-04-22 19:41:54 UTC
RemoteUrl: https://github.com/yeyuan98/clockSim
RemoteRef: HEAD
RemoteSha: 1afb7d2e515525f86570369da64d238b10f6419d
NeedsCompilation: yes
Packaged: 2026-07-12 05:26:39 UTC; root
Author: Ye Yuan [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-9641-9102>)
Maintainer: Ye Yuan <yeyu@umich.edu>