Package: gsAnalysis
Title: Miscellaneous tools for genomic sequence analysis
Version: 0.0.2
Authors@R: 
    person("Ye", "Yuan", , "yeyu@umich.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9641-9102"))
Description: A miscellaneous toolbox for various genomic sequence
        analysis tasks. Refer to package vignettes for different topics
        covered in this package. Part of the y3628 analysis suite.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
biocViews: CellBiology, Genetics
Imports: dplyr, readr, tibble, stringr, BSgenome, Biostrings,
        GenomicRanges, rtracklayer, universalmotif, GenomicFeatures,
        SummarizedExperiment, y3628, glmmTMB, emmeans, graphics,
        parallel
Depends: R (>= 4.1)
Suggests: BSgenome.Dmelanogaster.UCSC.dm6, knitr, rmarkdown,
        TxDb.Dmelanogaster.UCSC.dm6.ensGene
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev libx11-dev xz-utils
        zlib1g-dev
Repository: https://yeyuan98.r-universe.dev
Date/Publication: 2025-06-26 20:25:43 UTC
RemoteUrl: https://github.com/yeyuan98/gsAnalysis
RemoteRef: HEAD
RemoteSha: 0d98b644cb29c88be7b325b1ce12e70343f53557
NeedsCompilation: no
Packaged: 2026-07-25 06:01:24 UTC; root
Author: Ye Yuan [aut, cre] (ORCID: <https://orcid.org/0000-0001-9641-9102>)
Maintainer: Ye Yuan <yeyu@umich.edu>