Scanning parameter grid to understand circadian clock model1 years ago
Baseline: a limit cycle oscillator | Initial state grid scan | Grid generation | Running grid_scan()
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Models for circadian clock simulation1 years ago
LG model simulation scheme | Continuous LG model | Discrete LG model | Discrete LG model: how small time step is enough?
Noisy LG model: incorporating noise to the classical LG ODE clock model1 years ago
A SDE LG model | When is the model valid? | Noising scaling | Loading the noisy LG model | Example: noise in tim RNA M_T turnover | Phase portrait and periodogram
spotInRoi2 years ago
What is spotInRoi analysis | The example dataset | Workflow
Adenine base editing analysis2 years ago
Analysis of common intron properties2 years ago
Introduction | MaxEntScan: splicing site strength | Preparation | Required inputs: | Sample usage | phastCons: conservation scoring | BranchPointScan: distance of branchpoint to the 3' splice site
