Package: gsAnalysis 0.0.2

gsAnalysis: Miscellaneous tools for genomic sequence analysis

A miscellaneous toolbox for various genomic sequence analysis tasks. Refer to package vignettes for different topics covered in this package. Part of the y3628 analysis suite.

Authors:Ye Yuan [aut, cre]

gsAnalysis_0.0.2.tar.gz
gsAnalysis_0.0.2.zip(r-4.5)gsAnalysis_0.0.2.zip(r-4.4)gsAnalysis_0.0.2.zip(r-4.3)
gsAnalysis_0.0.2.tgz(r-4.5-any)gsAnalysis_0.0.2.tgz(r-4.4-any)
gsAnalysis_0.0.2.tar.gz(r-4.5-noble)gsAnalysis_0.0.2.tar.gz(r-4.4-noble)
gsAnalysis_0.0.2.tgz(r-4.4-emscripten)gsAnalysis_0.0.2.tgz(r-4.3-emscripten)
gsAnalysis.pdf |gsAnalysis.html✨
gsAnalysis/json (API)

# Install 'gsAnalysis' in R:
install.packages('gsAnalysis', repos = c('https://yeyuan98.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yeyuan98/gsanalysis/issues

On CRAN:

Conda:

cellbiologygenetics

2.70 score 1 scripts 11 exports 106 dependencies

Last updated 2 months agofrom:1e4dc91661. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 13 2025
R-4.5-winOKFeb 13 2025
R-4.5-macOKFeb 13 2025
R-4.5-linuxOKFeb 13 2025
R-4.4-winOKFeb 13 2025
R-4.4-macOKFeb 13 2025
R-4.3-winOKFeb 13 2025

Exports:bam_summary_cigarBranchPointScanIRFinderS_readIRFinderS_readSamplesMaxEntScanphastConsRIMErmats_filterrmats_readrmats_toGRangewriteXStringSetNamed

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemcellrangerclicliprcodetoolscolorspacecpp11crayoncurlDBIDelayedArraydplyrfansifarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehmshttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngprettyunitsprogressR6RColorBrewerRcppRcppThreadRCurlreadrreadxlrematchrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscalessnowSparseArraystringistringrSummarizedExperimentsystibbletidyselecttzdbUCSC.utilsuniversalmotifutf8vctrsviridisLitevroomwithrXMLXVectory3628yaml

Analysis of common intron properties

Rendered fromintron-properties.Rmdusingknitr::rmarkdownon Feb 13 2025.

Last update: 2024-08-11
Started: 2024-08-11